Nitrogen and phosphorus contents are analyzed in the overlying waters and pore waters taken from the Changjiang Estuary and Shanghai coastal tidal flats in this study. In addition, the diffusion fluxes of nitrogen and phosphorus across the sediment-water interface in tidal flats are estimated according to the nutrient concentration gradients at the interface. It has been indicated that the concentrations of ammonium, nitrite, nitrate and dissolved phosphorus in overlying waters range from 0.0082-2.56, 0.03-0.58, 0.69-5.38 and 0.035-0.53 mg/L, respectively, while 0.0025 - 1.35 mg /L for NH^-N, 0. 0055 ~0.20mg/L for NO2-N, 0.61-1.14 mg/L for NO3-N and 0.11~0.53mg/L for DP insurface pore waters.The findings have revealed that ammonium, nitrite, nitrate and dissolved phosphorus diffusionfluxes across the sediment-water interface are between -0.024~0.99, -0.39~ -0.0019, -3.09--0.12 and -0.48- 0.12 ug/ (cm.d ) respectively, showing that the sediment in tidal flats is the source of phosphorus and an important Nitrogen and phosphorus contents are analyzed in the overlying waters and pore waters taken from the Changjiang Estuary and Shanghai coastal tidal flats in this study. In addition, the diffusion fluxes of nitrogen and phosphorus across the sediment-water interface in tidal flats are estimated according to the nutrient concentration gradients at the interface. It has been indicated that the concentrations of ammonium, nitrite, nitrate and dissolved phosphorus in overlying waters range from 0.0082-2.56, 0.03-0.58, 0.69-5.38 and 0.035-0.53 mg / L, respectively, while 0.0025 to 1.35 mg / L for NH-N, 0. 0055 to 0.20 mg / L for NO2-N, 0.61 to 1.14 mg / L for NO3-N and 0.11 to 0.53 mg / L for DP insurface pore waters. findings have revealed that ammonium, nitrite, nitrate and dissolved phosphorus diffusion fluxes across the sediment-water interface are between -0.024 and 0.99, -0.39 and -0.0019, -3.09 and -0.12 and -0.48-0.12 ug / (cm.d) , showing that the sediment in tidal flats is the source of phosphorus and an important