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For the parameter identification of dynamic problems, a pseudo-parallel ant colony optimization (PPACO) algorithm based on graph-based ant system (AS) was introduced. On the platform of ANSYS dynamic analysis, the PPACO algorithm was applied to the identification of dynamic parameters successfully. Using simulated data of forces and displacements, elastic modulus E and damping ratio ξ was identified for a designed 3D finite element model, and the detailed identification step was given. Mathematical example and simulation example show that the proposed method has higher precision, faster convergence speed and stronger antinoise ability compared with the standard genetic algorithm and the ant colony optimization (ACO) algorithms.