This paper discusses Hawking radiation from the charged and magnetized Bafiados-Teitelboim-Zanelli (BTZ) black hole from the viewpoint of anomaly, initiated by Robinson and Wilczek recently. It reconstructs the electromagnetic field tensor and the Lagrangian of the field corresponding to the source with electric and magnetic charges to redefine an equivalent charge and gauge potential. It employs the covariant anomaly cancellation method to determine thecompensating fluxes of charge flow and energy-momentum tensor, which are shown to match with those of the 2- dimensional blackbody radiation at the Hawking temperature exactly.