整合分析肝细胞癌DNA甲基化谱和基因表达谱构建miR-1180-3p相关ceRNA调控网络

来源 :中华肝脏病杂志 | 被引量 : 0次 | 上传用户:liuyongqing0820
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
目的:通过整合癌症基因组图谱中肝细胞癌DNA甲基化谱和基因表达谱,分析肝细胞癌中miR-1180-3p表达水平并构建其相关ceRNA调控网络。方法:用癌症基因组图谱数据库分析肝细胞癌及癌旁组织中miR-1180-3p的表达水平,并筛选出差异表达长链非编码RNA(lncRNA)和mRNA。分别用LncBase数据库和TargetScan数据库预测miR-1180-3p与lncRNA和mRNA的靶向作用关系,并通过lncRNA的DNA甲基化谱筛选出DNA甲基化介导的lncRNA。用Cytoscape软件构建miR-1180-3p相关ceRNA网络,并用WebGestalt网站对ceRNA中相关mRNA进行GO分析和KEGG分析。结果:相比于低表达miR-1180-3p的患者[总生存时间(5.69±0.35)年],高表达miR-1180-3p患者的总生存时间较短[总生存时间(3.99±0.47)年],提示miR-1180-3p高表达是影响肝细胞癌预后的危险因素(风险比= 1.28, 95%可信区间为1.1~1.5,n P < 0.01)。研究中构建的miR-1180-3p相关ceRNA调控网络包含2个lncRNA(F11-AS1和LINC01511)以及37个mRNA。n 结论:成功构建了miR-1180-3p相关ceRNA调控网络,其中DNA甲基化介导的F11-AS1及F11-AS1/miR-1180-3p/C11of54 ceRNA调控轴在肝细胞癌的发生和发展中起重要作用。“,”Objective:This study analyzes the expression level of miR-1180-3p and constructs the regulatory network of relevant ceRNA by integrating the DNA methylation and gene expression profile of hepatocellular carcinoma from the Cancer Genome Atlas (TCGA).Methods:Firstly, the expression level of miR-1180-3p in hepatocellular carcinoma and adjacent tissues was analyzed by TCGA database, and the differential expression of lncrna and mRNA was screened. Secondly, the LncBase database and the TargetScan database were used to predict the relationship between miR-1180-3p and lncRNA and mRNA, and the DNA methylation-mediated lncRNA was screened by the DNA methylation profile of lncRNA. Finally, Cytoscape software was used to construct miR-1180-3p relevant ceRNA network, and WebGestalt website was used to perform GO and KEGG analysis of related mRNA in ceRNA.Results:Compared with patients with low expression of miR-1180-3p (mean overall survival duration, 5.69 ± 0.35 years), patients with high expression of miR-1180-3p had shorter overall survival time (mean overall survival duration, 3.99 ± 0.47 years), indicating that the high expression of miR-1180-3p was hepatocellular carcinoma risk factor affecting the prognosis (n HR = 1.28, 95% n CI = 1.1 ~ 1.5, n P < 0.01). A miR-1180-3p related ceRNA regulatory network was constructed in this study, which contained 2 lncRNAs (F11-AS1 and LINC01511) and 37 mRNAs.n Conclusion:This study has successfully constructed miR-1180-3p relevant ceRNA regulatory network, and DNA methylation-mediated F11-AS1 and F11-AS1/miR-1180-3p/C11of54 ceRNA regulatory axis has played an important role in the occurrence and development of hepatocellular carcinoma.
其他文献
为分析茴香(Foeniculum vulgare)秸秆替代玉米(Zea mays)秸秆对湖羊瘤胃液挥发性脂肪酸、微生物区系和肌肉脂肪酸组成的影响,本研究选取48只健康无病的湖羊公羔作为试验对象,
乙型肝炎病毒(Hepatitis B virus,HBV)是对人类威胁最大的病毒之一。根据全基因组>8﹪的差异,HBV基因组分为A~H八个亚型。HBV基因型分布具有明显的地域特征。不同HBV基因型感染者
由乙型肝炎病毒(Hepatitis B virus,HBV)感染引起的乙型肝炎是严重危害人类健康的疾病,其主要危害性在于HBV在患者体内的持续性存在易引起慢性肝炎、肝硬化,并与肝细胞癌的发生
期刊
2020 年 7 月份与去年同期相比,猪肉、牛肉、羊肉价格分别上涨 103.78%、17.93%、9.71%;鸡肉和鸡蛋价格分别下降 1.95%、25.60%.玉米、豆粕、棉粕、DDGS 价格分别上涨 9.18%、4.41%
期刊
随着科技时代的日新月异,现代社会已离不开电脑,电脑正在迅速地占领人类生活的各个方面。然而,科学家们却预言,飞速发展的电脑技术,却有可能砸掉大部分电脑商的饭碗,在将来,
目的:评价乳腺核磁共振(MRI)简易序列(AP)对乳腺肿瘤的诊断准确性。方法:回顾性分析86例乳腺MRI检查,采用AP和常规序列(FDP)两种检查方法对图像进行对比分析,AP 包括轴位T2加权成像(T2
为研究不同水平N-羟甲基蛋氨酸钙(n-Hydroxymethyl methionine calcium,N-HMM-Ca)对泌乳期荷斯坦奶牛生产性能、乳品质及瘤胃发酵的影响.选用胎次、产奶量、泌乳天数相近的30
目的对延边地区急性呼吸道感染患儿进行呼吸道合胞病毒RSV的监测并进行亚型分析,探讨其流行规律。方法2002年11月-2006年4月,于我院就诊的门诊及住院患儿咽拭子或鼻咽分泌物标
【目的】性信息素合成激活肽(PBAN)是控制昆虫产生性信息素的激素,本文旨在分析水稻螟虫神经肽PBAN及其受体的序列。【方法】通过t Blastn同源检索从水稻螟虫基因组和转录组数