Transcriptome analysis in an array of cultivated and wild peanut accessions using Illumina sequencin

来源 :The Sixth International Conference of the Peanut Research Co | 被引量 : 0次 | 上传用户：cj258399542

【摘要】

：

In order to develop markers for genomic analysis and marker-assisted breeding, we are undertaking a survey of SNP diversity in peanut.Sequencing four cultivars,

【作者】

：

R Chopra G Burow A Farmer J Mudge CE Simpson Z Xin T Wilkins MD Burow

【机构】

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TexasTechUniversity,DepartmentofPlantandSoilScience,Lubbock,TX79403USAUSDA-ARS-CSRL,Lubbock,TX79415,

【出处】

：

The Sixth International Conference of the Peanut Research Co

【发表日期】

：

2013年6期

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In order to develop markers for genomic analysis and marker-assisted breeding, we are undertaking a survey of SNP diversity in peanut.Sequencing four cultivars, representing all four U.S.market types, generated an average of 41.7 million reads.Alignment of these sequences against a custom reference of the Tifrunner TSA and ESTs in GenBank produced a mean of 39,807 contigs per accession with an N50 of 741bp.From 3,027 to 5,736 SNPs distinguished pair-wise combinations of cultivars.

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