Maximal Unbiased Benchmarking Data Sets for Human Chemokine Receptors and Its Comparative Analysis

来源 :第九届国际分子模拟与信息技术应用学术会议(ICMS&I2018) | 被引量 : 0次 | 上传用户:pp6vip123
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
  Chemokine receptors(CRs)have long been druggable targets for the treatment of inflammatory diseases and HIV-1 infection.As a powerful technique,virtual screening(VS)has been widely applied to identifying small molecule leads for modern drug targets including CRs.For rational selection of a wide variety of VS approaches,ligand enrichment assessment based on a benchmarking data set has become an indispensable practice.However,the lack of versatile benchmarking sets for the whole CRs family that are able to unbiasedly evaluate every single approaches including both structure-and ligand-based VS,somewhat hinders modern drug discovery efforts.To address this issue,we constructed Maximal-Unbiased Benchmarking Data sets for human Chemokine Receptors(MUBD-hCRs)using our recently developed tools of MUBD-DecoyMaker.The MUBD-hCRs encompasses 13 subtypes out of 20 chemokine receptors,composed of 404 ligands and 15756 decoys so far and are readily expandable in the future.It had been thoroughly validated that MUBD-hCRs ligands are chemically diverse while its decoys are maximal-unbiased in terms of “artificial enrichment”,“analogue bias”.In addition,we studied the performance of MUBD-hCRs,in particular CXCR4 and CCR5 data sets,in ligand enrichment assessments of both structure and ligand-based VS approaches in comparison with other benchmarking data sets available in public domain and demonstrated that MUBD-hCRs is much capable of designating the optimal VS approach.Taken together,MUBD-hCRs is a unique and maximal-unbiased benchmarking set that covers major CRs subtypes so far.
其他文献
Oilusuallyoccurs in the formationsaturated to some degree with methane,which is crucial for the migration,accumulation and recovery of hydrocarbon in the unconventional petroleum system.In this work,t
会议
本文以一种新合成的弱碱驱油用表面活性剂酚衍芳基烷基磺酸盐(NPAS)为研究对象,通过分子动力学模拟(MD)方法模拟了C12-NPAS在油水界面的聚集行为,从微观层面详细分析其对界面性质的改变。结果表明苯环的最佳取代位点为C3,即3-C12-NPAS界面活性最佳。(1)通过对比界面张力值可以得出:3-C12-NPAS和4-C12-NPAS降低界面张力的能力相对较强,表现出相对较好的界面性质,其中3-
Methanol steam reforming is an efficient way for hydrogen production.The spinel aluminates,CuAl2O4 of cubic structure,show excellent stability for methanol steam reforming reaction,since the active Cu
会议
CdSiP2(CSP)crystal is expected as one of the successful crystals with well-known chalcopyrite ABⅢCⅥ2type in the field of nonlinear optical applications,considering its apparent birefringence,high nonl
会议
Carbon nanotubes(CNTs)/two-dimensional transition metal dichalcogenides(MX2)hybrids have shown unique physical properties,making them promising materials for various applications ranging from photocat
The control of crystal morphologyis crucial to preparation of α-hemihydrategypsum(α-HH).α-HH was prepared from phosphogypsum(PG)in Na2SO4 solution at different temperatures.The effect of maleic acid(C
A series of core-shell catalysts aiming at CO oxidative coupling to dimethyl oxalate(DMO)were constructed,and effects of the second metal doping and surface structures on the reaction activity and fav
会议
This talk focuses on two types of promoters,metals and metal oxides,which can enhance the propylene selectivity and anti-coking ability for propane dehydrogenation (PDH) catalyst.For Pt-based catalyst
会议
Alzheimers disease(AD)is a neurodegenerative disorder.Substrate-specific Acetylcholinesterase(AChE)plays a vital role in the AD treatment.Flavonoids with AChE inhibitory activities and low toxicity ar
Background: Tyrosinase plays a key role in the formation of skin melanin.The excessive accumulation of skin melanin will cause the serious aesthetic problems for human beings.Hypothesis/purpose: To fi