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Acinetobacter gyllenbergii strain FMP01 is a strictly aerobe, non-motile, Gram-negative, catalase-positive bacteria isolated from soil collected in 2012 from Longhua District, Haikou, Hainan, China.Strain FMP01 shows high catalase activity of 80 U/mg.Here we describe the features of Acinetobacter gyllenbergii strain FMP01, together with genome sequence information and its annotation.The 4,284,733 bp high-quality-draft genome is arranged into 25 scaffolds of 26 contigs containing 3,916 protein-coding genes and 71 RNA-only encoding genes.