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In this article, three novel and simple molecular structure with donor-acceptor (D-A) type copolymers via only head-to-head alkoxy (OR) and/or alkylthio (SR) side chains onto the bithiophene (BT) as donor units and fluorinated benzotriazole (FBTA) as acceptor unit, namely, PBTOR-FBTA, PBTOSR-FBTA and PBTSR-FBTA, were successfully designed and synthesized. The impacts of sulfur-oxygen (S· · ·O) or sulfur-sulfur (S· · ·S) noncovalent interactions on their physicochemical properties, molecular stacking, carrier mobility, morphologies of blend films, as well as their photovoltaic performance were deeply and systematically studied. The introduction of SR side-chains suddenly lowered the highest occupied molecular orbital (HOMO) energy levels, blue-shifted absorption, enhanced π-π stacking, as well as improved morphology of the photoactive layer blends in comparison with the reference polymer without SR side-chain. Polymer solar cells (PSCs) were fabricated to estimate their photovoltaic performance of the polymers. Under an optimized blend ratio of PBTSR-FBTA:PC71BM (1:0.8, w/w), the PBTSR-FBTA-based device exhibits a higher power conversion efficiency (PCE) of 6.25％, which is about 3.34 and 1.87 folds than that of the PBTOR-FBTA and PBTOSR-FBTA-based devices, respectively. Our research results demonstrate that the modification of the simple and low-cost SR side chains is an effective strategy to improve the photovoltaic performance of the polymers.