Genome-wide alternative splicing variation and its potential contribution to maize immature-ear hete

来源 :作物学报(英文版) | 被引量 : 0次 | 上传用户:fengxiaogang
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Heterosis is a well-known phenomenon widely applied in agriculture. Recent studies have suggested that differential gene and protein expression between hybrids and their parents play important roles in heterosis. Alternative splicing (AS) is an essential posttranscriptional mechanism that can greatly affect the transcriptome and proteome diversity in plants. However, genome-wide AS divergence in hybrids compared to their parents and its potential contribution to heterosis have not been comprehensively investigated. We report the direct profiling of the AS landscape using RNA sequencing data from imma-ture ears of the maize hybrid ZD808 and its parents NG5 and CL11. Our results revealed a large number of significant differential AS (DAS) events in ZD808 relative to its parents, which can be further classified into parental-dominant and novel DAS patterns. Parental-dominant, especially NG5-dominant, events were prevalent in the hybrid, accounting for 42%of all analyzed DAS events. Functional enrichment anal-ysis revealed that the NG5-dominant AS events were involved mainly in regulating the expression of genes associated with carbon/nitrogen metabolism and cell division processes and contributed greatly to maize ear heterosis. Among ZD808, CL11, and NG5, 32.5% of DAS contained or lacked binding sites of at least one annotated maize microRNA (miRNA) and may be involved in miRNA-mediated posttran-scriptional regulation. Cis regulation was the predominant contributor to AS variation and participates in many important biological processes associated with immature ear development. This study provides a comprehensive view of genome-wide alternative splicing variation in a maize hybrid.
其他文献
天底下没有新鲜的事情。尽管温州人出于“会哭的孩子有奶吃”的策略,不断强调当前的危机如何比2008年严重,但不管从这场危机的经济背景—货币超发、经济高增长和底层工资快速上涨之后越来越严重的通胀,还是危机的表现形式—政府为治理通胀紧缩信贷导致非正规金融膨胀、失控并最终崩溃而言,这场危机与2008年的危机没有多少不同。  唯一不同的是,2008年温州危机深化的过程,被相当程度上嫁祸给随后爆发于美国的金融
“弯弯的故乡路,虽不能常常把你走,那牧歌悠扬的小路,却在我梦中牵挂;亲亲的故乡水,像一碗故乡的酒,那浓浓的芳香,日夜陶醉着我的心……”云南省军区某边防团军务参谋格茸七林,心里静静流淌着这首《思乡情》。在2013年万家团圆的除夕夜,站在值班室的窗口,望着夜空中升腾起的烟花,他的眼眶湿润了。这个春节让他格外揪心,瘫痪了24年的阿爸龚曲吹扎,病情更加沉重。  “带着曾经的骁勇,伴着今生的爱恋”  有人说
为明确血蓝蛋白基因在新疆优势害虫西伯利亚蝗Gomphocerus sibiricus卵发育过程中的作用,本研究采用实时荧光定量PCR技术检测血蓝蛋白基因Hc1、Hc2在西伯利亚蝗卵不同发育阶
为明确群居型和散居型亚洲小车蝗Oedaleus asiaticus对气候变化的呼吸代谢响应机制,采用多通道昆虫呼吸仪测定15、20、25、30和35℃温度下2种生态型亚洲小车蝗的呼吸率、代谢
冬瓜喜温耐热,产量高,耐储运,是夏秋上市的主要蔬菜,也是夏秋季节老百姓喜食的蔬菜.随着我国经济的快速发展,人工成本逐步提高,成为蔬菜种植成本的主要来源.实现冬瓜露地轻简
为明确中哈边境迁飞蝗虫降落过程的气象背景,选择中哈边境塔城地区蝗虫迁飞为害最严重的1999年为例,基于当年迁飞蝗虫降落时间、地点及为害程度等数据,利用中尺度气象预报与