严重急性呼吸综合征冠状病毒感染肺损伤机制与干预药物的生物信息学分析

来源 :中华实验和临床病毒学杂志 | 被引量 : 0次 | 上传用户:xiaoppqq
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
目的:分析严重急性呼吸综合征冠状病毒(severe acute respiratory syndrome coronavirus, SARS-CoV)感染所致急性肺损伤的机制及潜在干预药物,为治疗新型冠状病毒肺炎(COVID-19)提供参考。方法:使用基因表达数据库(Gene Expression Ominibus, GEO)筛选SARS-CoV转录组数据,使用R语言包对数据进行差异表达分析及京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes, KEGG)和基因本体学(Gene Ontology, GO)富集分析。使用STRING在线分析网站进行蛋白质互作网络分析,筛选出关键基因。再应用表观精准治疗预测平台(Epigenomic Precision Medicine Prediction Platform, EpiMed)对关键基因进行多组学关联分析和潜在治疗药物预测。结果:选择SARS-CoV全基因组表达谱数据,共筛选出差异基因3 606个,其中上调2 148个,下调1 458个。GO富集主要与病毒感染、白细胞迁移与粘附、急性炎症反应和胶原蛋白分泌等有关。KEGG富集主要与信号转导、急性炎症、免疫反应等有关。蛋白互作网络分析筛选得到PTPRC、TIMP1、ICAM1和IL1B等10个肺损伤相关的关键基因。EpiMed平台预测出白头翁、虎杖、TNF-α抑制剂、泛昔洛韦、氟伐他汀等药物具有潜在治疗作用。结论:SARS-CoV感染可通过激活一系列炎症相关分子引发肺损伤,可能有效的治疗药物包括白头翁、虎杖、TNF-α抑制剂、泛昔洛韦和氟伐他汀。“,”Objective:To analyze the mechanism and potential intervention drugs of acute lung injury caused by severe acute respiratory syndrome coronavirus (SARS-CoV) infection in order to provide reference for the treatment of COVID-19.Methods:Gene Expression Omnibus (GEO) announcement database was used to screen coronavirus transcriptome data, and R language package was used for differential expression analysis and Kyoto Gene and Genome Encyclopedia (KEGG) and Gene Ontology (GO) enrichment analysis. A protein-protein interaction (PPI) network analysis was carried out by using STRING online analysis website, and the key genes were screened. Then the Epigenomic Precision Medicine Prediction Platform (EpiMed) was used to analyze the association of key genes and predict potential therapeutic drugs.Results:Based on the whole genome expression profile data of SARS-CoV, a total of 3 606 differential genes were screened, including 2 148 up-regulated and 1 458 down-regulated. GO enrichment is mainly related to viral infection, leukocyte migration and adhesion, acute inflammation and collagen secretion. KEGG enrichment is mainly related to signal transduction, acute inflammation, immune response and so on. Ten key genes related to lung injury, such as PTPRC, TIMP1, ICAM1 and IL1B, were screened by protein interaction network analysis. EpiMed platform predicted that pulsatilla chinensis, polygonum cuspidatum, tumor necrosis factor-α inhibitors, famciclovir, fluvastatin and other drugs have potential therapeutic effects.Conclusions:SARS-CoV infection can cause lung injury by activating a series of inflammation-related molecules. Drugs that may be effective in the treatment of coronavirus infections, including pulsatilla chinensis, polygonum cuspidatum, tumor necrosis factor-α inhibitors, famciclovir and fluvastatin.
其他文献
目的:探究术前应用间苯三酚联合奥布卡因对宫腔镜手术患者的临床疗效。方法:选取2017年3月至2018年3月于本院接受宫腔镜手术的124例患者,随机数字表法分为对照组62例与观察组6
目的:探讨双相情感障碍抑郁相患者无抽搐电休克治疗前后静息态脑功能磁共振改变情况。方法:选取2018年11月至2019年5月间合肥市第四人民医院收治的60例双相情感障碍抑郁相患
目的:探讨纳络酮(Naloxone)对高浓度氧诱发新生大鼠肺损伤的保护作用。  方法:选用新生Wistar大鼠120只,随机分为空气对照组、高氧模型组和纳络酮治疗组(每组 n=40)。高氧模型组和
目的:探讨产前超声在胎儿肾上腺区肿块定位、定性诊断及指导预后的价值。方法:以病理及随访结果为标准,回顾性分析长沙市妇幼保健院43例胎儿肾上腺区肿块的临床资料、超声声像
目的:  应用免疫组织化学方法,对bFGF和uPA在不同TNM分期及临床分期鼻咽癌(Nasopharyngeal Carcinoma,NPC)组织中的表达情况进行检测,分析其与临床病理因素和患者治疗后生存时