To study the uncertain optimization problems on implementation schedule, time-cost trade-off and quality in enterprise resource planning (ERP) implementation, combined with program evaluation and review technique (PERT), some optimization models are proposed, which include the implementation schedule model, the timecost trade-off model, the quality model, and the implementation time-cost-quality synthetic optimization model. A PERT-embedded genetic algorithm (GA) based on stochastic simulation technique is introduced to the optimization models solution. Finally, an example is presented to show that the models and algorithm are reasonable and effective, which can offer a reliable quantitative decision method for ERP implementation.