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Affinity chromatography is one of the most popular methods for protein purification.Yeast 3,5-bisphosphate nucleotidase (YND) had been found hydrolyzing 3-phosphoadenosine 5-phosphate (PAP) with submicromolar Km, which indicated the tight interactions between them.In order to explore the feasibility of YND as a protein purification affinity tag, YND was characterized with PAP as substrate.